RnoEX6046359 @ rn6
Exon Skipping
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13578850-13580821:-
Coord C1 exon
chr10:13579352-13580821
Coord A exon
chr10:13579092-13579280
Coord C2 exon
chr10:13578850-13578999
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGACTGTTCCTTCCCTGCAGCTT
3' ss Score
12.18
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTGGGTCCCCCTGGGTTTCTTCTCTTCCAGCTGTAGCCTGGACTATGGCCGTCTGCCTGCTCCTGCTGATGGCCCTGCTGGTCCAGGGCCAGAAGCCCTCTGTTTCCCAGCCCCCCAGGCTCAGCCTGATGGTGGAGGCCTTCTGGCCTTCAGTGTGCAGGATGGCAGCCCACAGGGCCTGGACCTGGACAACAGCCCCGTGCTCCAAGACTGGGTGACTGCCACAGATATTCGCATAGTACTCACAAGGCCTGCCATTCAGGGAGACACCAGGGACGGTGGGGTCACAGTCCCCTACTCCTACTCAGCCACTGAGCTTCAGGTGGGAGGTCGATGCAAGTGCAATGGGCATTCCTCACGGTGTCTGATGGACACCCATGGCCACCTGGTCTGCGACTGCCAGCATGGTACAGAGGGCCCTGATTGCAGCCGCTGCAAGCCCTTCTACTGCGACAGGCCATGGCAGCGGGCTACAGGGCAGGAAGCCCACGCTTGCCTTG
Seq A exon
CTTGCTCCTGCAATGGCCACGCCCGAAGATGCCGCTTCAACATGGAGCTGTACCGACTGTCCGGCCGCCGCAGTGGTGGGGTGTGCCTCAATTGCCGGCACAATACTGCTGGTCGTCACTGCCACTACTGTCGGGAGGGCTTCTATCGTGACCCAGGCCGTGTCCTGAGTGACCGTCGTGCTTGCAGAG
Seq C2 exon
CTTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAAACCTGTAACCAGACCACAGGCCAGTGTCCCTGTAAGGATGGTGTTACCGGCCTCACCTGTAACCGCTGCGCCCCAGGTTTCCAGCAGAGCCGTTCTCCTGTCGCACCTTGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970-'4-1,'4-0,5-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=69.0),PF0005319=Laminin_EGF=WD(100=17.4)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTACTCCTACTCAGCCAC
R:
TGGTTACAGGTTTTGCCAGCA
Band lengths:
255-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]