HsaEX0044060 @ hg19
Exon Skipping
Gene
ENSG00000162068 | NTN3
Description
netrin 3 [Source:HGNC Symbol;Acc:8030]
Coordinates
chr16:2521500-2523135:+
Coord C1 exon
chr16:2521500-2522630
Coord A exon
chr16:2522702-2522890
Coord C2 exon
chr16:2522986-2523135
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGACCCATCCCTCCCTGCAGCTT
3' ss Score
10.19
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CTGGGCCCCGCTGGGCTTCTTCTCCTCCCACTGTGACCTGGACTATGGCCGTCTGCCTGCCCCTGCCAATGGCCCAGCTGGCCCAGGGCCTGAGGCCCTGTGCTTCCCCGCACCCCTGGCCCAGCCTGATGGCAGCGGCCTTCTGGCCTTCAGCATGCAGGACAGCAGCCCCCCAGGCCTGGACCTGGACAGCAGCCCAGTGCTCCAAGACTGGGTGACCGCCACCGACGTCCGTGTAGTGCTCACAAGGCCTAGCACGGCAGGTGACCCCAGGGACATGGAGGCCGTCGTCCCTTACTCCTACGCAGCCACCGACCTCCAGGTGGGCGGGCGCTGCAAGTGCAATGGACATGCCTCACGGTGCCTGCTGGACACACAGGGCCACCTGATCTGCGACTGTCGGCATGGCACCGAGGGCCCTGACTGCGGCCGCTGCAAGCCCTTCTACTGCGACAGGCCATGGCAGCGGGCCACTGCCCGGGAATCCCACGCCTGCCTCG
Seq A exon
CTTGCTCCTGCAACGGCCATGCCCGCCGCTGCCGCTTCAACATGGAGCTGTACCGACTGTCCGGCCGCCGCAGCGGGGGTGTCTGTCTCAACTGCCGGCACAACACCGCCGGCCGCCACTGCCACTACTGCCGGGAGGGCTTCTATCGAGACCCTGGCCGTGCCCTGAGTGACCGTCGGGCTTGCAGGG
Seq C2 exon
CCTGCGACTGTCACCCGGTTGGTGCTGCTGGCAAGACCTGCAACCAGACCACAGGCCAGTGTCCCTGCAAGGATGGCGTCACTGGCCTCACCTGCAACCGCTGCGCGCCTGGCTTCCAGCAAAGCCGCTCCCCAGTGGCGCCCTGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162068-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=69.0),PF0005319=Laminin_EGF=WD(100=17.4)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAATGGACATGCCTCAC
R:
CAGTGACGCCATCCTTGCAG
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)