GgaEX0013523 @ galGal4
Exon Skipping
Gene
ENSGALG00000029072 | NTN3
Description
netrin-3 precursor [Source:RefSeq peptide;Acc:NP_001264534]
Coordinates
chr14:14022233-14035453:-
Coord C1 exon
chr14:14034482-14035453
Coord A exon
chr14:14027776-14027964
Coord C2 exon
chr14:14022233-14022382
Length
189 bp
Sequences
Splice sites
3' ss Seq
GACACTCTGCTCCTTTGCAGCCT
3' ss Score
8.38
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCGCAGTGCCGCAAGATCTACGGCAAGCCCAGCAAGGCCACCGTCACCAAGCAGAACGAGCAGGAGGCGCTGTGCACCGATGGCCTCACCGACCTCTACCCGCTCACTGGCGGCCTCATCGCCTTCAGCACGCTCGACGGGCGGCCCTCGGCCCAGGACTTCGACAGCAGCCCTGTGCTGCAGGACTGGGTGACGGCCACCGACATCCGGGTGGTGTTCAGCCGTCCCCACCTCTTCCGCGAGCTGGGGGGCCGCGAGGCTGGCGAGGAGGACGGGGGGGCCGGGGCCACCCCCTACTACTACTCGGTGGGCGAGCTGCAGGTCGGCGGGCGCTGCAAGTGCAACGGGCACGCCTCGCGCTGCGTCAAGGACAAGGAGCAGAAGCTGGTGTGTGACTGCAAGCACAACACCGAGGGGCCCGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCGTGGCAGCGGGCCAGCGCCCGCGAGGCCAACGAGTGCCTGG
Seq A exon
CCTGCAACTGCAACCTGCACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGGCGGCGTTTGCCTCAACTGCCGACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTCAGCAAGTCCATCACGGACCGCAAGGCCTGCAAAG
Seq C2 exon
CCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029072-'4-5,'4-1,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.3),PF0005319=Laminin_EGF=WD(100=16.6)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGTGTGTGACTGCAA
R:
GCTCTGCTGGAAGCCCTTG
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]