DreEX6016608 @ danRer10
Exon Skipping
Gene
ENSDARG00000022531 | ntn1b
Description
netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
Coordinates
chr3:25625601-25682914:-
Coord C1 exon
chr3:25681864-25682914
Coord A exon
chr3:25644434-25644622
Coord C2 exon
chr3:25625601-25625750
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCCTCTCCCATAGCTT
3' ss Score
10.35
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTTTCAGTTCTACTCAACCCAGTGCAAGAAAATGTACAACAAGCCCAGCAAAGCTGCCATCACCAAGCAGAACGAGCAGGAGGCGATCTGCACGGACTCTCACACGGACATGCAGCCGTTAACCGGCGGCCTCATCGCGTTCAGCACGCTGGATGGCAGACCGTCCGCGCACGACTTCGACAACTCGCCCGTCCTGCAGGACTGGGTCACGGCCACCGACATCAAAGTGACCTTCAACCGGCTGCACACGTTCGGGGATGAGAACGAGGACGATTCGGAGCTCGCCAGGGACTCGTATTTTTACGCGGTGTCTGACCTGCAGGTCGGTGGACGGTGTAAGTGTAACGGGCACGCGTCGAAGTGCGTGAAGGACCGGGAAGGAAACCTAGTGTGCGAATGCAAGCACAACACTGCGGGACCAGAGTGTGACAGGTGTAAACCCTTCCACTACGACCGGCCCTGGCAGCGCGCGACTGCCAGAGAGGCGAACGAGTGTGTCG
Seq A exon
CTTGTCACTGTAACCTACATGCCCGCCGCTGCCGCTTCAACATGGAGCTGTATAAGTTGTCAGGCCGCAGGAGTGGAGGAGTCTGCCTGAACTGCAGACACAACACCGCCGGACGCCACTGCCACTACTGTAAAGAGGGCTACTACAGAGACATGAGCAAGGCTATATCACACCGACGTGCATGCAAAG
Seq C2 exon
CCTGCGATTGTCATCCTGTTGGTGCAGCTGGTAAGACCTGTAACCAGACAACTGGACAGTGTCCATGTAAAGATGGTGTGACTGGCATCACCTGTAATCGCTGTGCTAAAGGATACCAGCAGAGCAGATCACCCATCGCCCCCTGTATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022531-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=WD(100=68.7),PF0005319=Laminin_EGF=WD(100=15.9)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCAAGCACAACACTGCG
R:
GATGGGTGATCTGCTCTGCTG
Band lengths:
243-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]