DreEX0052771 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21543707-21558786:+
Coord C1 exon
chr16:21543707-21543837
Coord A exon
chr16:21548156-21548263
Coord C2 exon
chr16:21558649-21558786
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGGTTGCTTTTGCAGGCT
3' ss Score
8.84
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TTCATACAACCATGAAATCAGCGCTGTGTATGCTGACTACAGAGAAGGAGAGAGTTAAACAGATGCTGGAGCACGAGCCTTGTCCATCACCATCAGCTCAGCTCCTGGGACTAAAGAACGCTCTGACTGCA
Seq A exon
GCTGTAACGCAGAACGCTGAGCTGAGAGAGCGACTGTGCAAGATTCATGCAGAGTCGCACATCTCTGAGCCCACTGTGCATATAAACCTCAGCCCTGGCCCCCTGCAG
Seq C2 exon
AAGCAAGACTCCAGTGATTGTTCCCGCCCCCTTGTTCACCAGGCATCCAATGAGAGCAGAGCTTCCATTTCAGAGTCACTGTCAGAGTTCTTTGATGCACAGGAAGTGCTGCTGTCAGCGAGTTCTTCAGAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.417 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCGCTGTGTATGCTGAC
R:
TGAAGAACTCGCTGACAGCAG
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]