DreEX0053711 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14942079-14942872:-
Coord C1 exon
chr25:14942831-14942872
Coord A exon
chr25:14942525-14942740
Coord C2 exon
chr25:14942079-14942244
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGTTTTCCATCTAGGTG
3' ss Score
11.69
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ACCCATGCTGATGCAAAAGTCCAAGTGCTGGACAATGAAAAC
Seq A exon
GTGTCCAACGGCTGCGTGAGTAAAATCTTGGGTAGATACTATGAAACAGGCTCCATCAGACCCAGGGCGATCGGAGGAAGTAAACCACGAGTAGCGACTCCCGAGGTGGTCGGCAAAATTGCCCAGTACAAGAGGGAGTGTCCGTCAATCTTCGCGTGGGAAATCCGAGACAGGCTGCTATCAGAGGGGGTCTGCACAAACGATAATATACCCAGT
Seq C2 exon
GTGTCATCGATAAACAGAGTACTGCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGATGGCATGTATGAAAAGCTGAGGATGCTGAACGGTCAGACCGGCACGTGGGGGACCCGGCCGGGCTGGTACCCCGGAACCTCGGTGCCAGGACAGCCCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-'13-17,'13-16,16-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.004 C2=0.642
Domain overlap (PFAM):
C1:
PF0029213=PAX=FE(15.5=100)
A:
PF0029213=PAX=FE(56.8=100)
C2:
PF0029213=PAX=PD(6.4=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCAAAAGTCCAAGTGC
R:
CTTGATTGGGCTGTCCTGGC
Band lengths:
202-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]