MmuEX6103399 @ mm9
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105524908-105526100:+
Coord C1 exon
chr2:105524908-105524949
Coord A exon
chr2:105525044-105525259
Coord C2 exon
chr2:105525935-105526100
Length
216 bp
Sequences
Splice sites
3' ss Seq
TGTCCAATTCCCTAATGCAGGTA
3' ss Score
8.3
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ACCCATGCAGATGCAAAAGTCCAGGTGCTGGACAATGAAAAC
Seq A exon
GTATCCAACGGTTGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGAGGGAGTAAGCCAAGAGTGGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAACGGGAGTGCCCTTCCATCTTTGCTTGGGAAATCCGAGACAGATTATTATCCGAGGGGGTCTGTACCAACGATAACATACCCAGT
Seq C2 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACACGCCCTGGTTGGTATCCCGGGACTTCAGTACCAGGGCAACCCACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'20-31,'20-28,25-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.005 C2=0.830
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(18.5=66.7)
A:
PF0029213=PAX=FE(51.1=100)
C2:
PF0029213=PAX=PD(23.0=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000016435, ENSMUSP00000087878, ENSMUSP00000097236, ENSMUSP00000106711, ENSMUSP00000106712, ENSMUSP00000106713, ENSMUSP00000106714, ENSMUSP00000106715, ENSMUSP00000106716, ENSMUSP00000115032, ENSMUSP00000117154, ENSMUSP00000118457, ENSMUSP00000119375, ENSMUSP00000121302, ENSMUSP00000122311, ENSMUSP00000129344
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCAAAAGTCCAGGTG
R:
TGGGTTGCCCTGGTACTGAAG
Band lengths:
196-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: