GgaEX1047490 @ galGal4
Exon Skipping
Gene
ENSGALG00000012123 | Pax-6
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5225498-5227320:-
Coord C1 exon
chr5:5227190-5227320
Coord A exon
chr5:5226026-5226241
Coord C2 exon
chr5:5225498-5225663
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTGTCCGCTTCCCTATCCAGGTG
3' ss Score
12.36
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTCACAGCGGCGTGAACCAGCTCGGCGGGGTGTTCGTCAACGGGAGGCCGCTGCCCGACTCCACGCGGCAGAAGATCGTGGAACTCGCGCACAGCGGCGCGCGGCCGTGCGACATCTCCCGAATCCTGCAG
Seq A exon
GTGTCGAATGGATGTGTGAGTAAAATTTTGGGCAGGTATTACGAAACTGGCTCCATCAGGCCCAGGGCGATCGGAGGTAGTAAGCCGAGAGTAGCGACTCCCGAAGTTGTAAGCAAAATAGCGCAGTATAAACGAGAGTGCCCCTCCATCTTTGCGTGGGAGATTCGAGACAGATTACTCTCGGAGGGGGTCTGTACCAACGATAACATACCCAGT
Seq C2 exon
GTGTCGTCGATAAACAGAGTCCTCCGCAACCTGGCTAGCGAAAAGCAACAGATGGGTGCCGACGGGATGTACGACAAGCTAAGGATGCTGAACGGGCAGACGGGGACATGGGGCACCCGGCCCGGCTGGTATCCCGGCACCTCGGTACCCGGGCAGCCCGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123-'10-8,'10-7,15-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.727 A=0.000 C2=0.804
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(30.9=97.7)
A:
PF0029213=PAX=FE(51.1=100)
C2:
PF0029213=PAX=PD(5.8=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGCGGCGTGAACC
R:
CCCCATGTCCCCGTCTGC
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]