GgaEX1047490 @ galGal3
Exon Skipping
Gene
ENSGALG00000012123 | PAX6_CHICK
Description
NA
Coordinates
chr5:5262411-5263289:-
Coord C1 exon
chr5:5263248-5263289
Coord A exon
chr5:5262939-5263154
Coord C2 exon
chr5:5262411-5262576
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTGTCCGCTTCCCTATCCAGGTG
3' ss Score
12.36
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ACCCATGCAGATGCAAAAGTCCAAGTGCTGGACAATCAAAAC
Seq A exon
GTGTCGAATGGATGTGTGAGTAAAATTTTGGGCAGGTATTACGAAACTGGCTCCATCAGGCCCAGGGCGATCGGAGGTAGTAAGCCGAGAGTAGCGACTCCCGAAGTTGTAAGCAAAATAGCGCAGTATAAACGAGAGTGCCCCTCCATCTTTGCGTGGGAGATTCGAGACAGATTACTCTCGGAGGGGGTCTGTACCAACGATAACATACCCAGT
Seq C2 exon
GTGTCGTCGATAAACAGAGTCCTCCGCAACCTGGCTAGCGAAAAGCAACAGATGGGTGCCGACGGGATGTACGACAAGCTAAGGATGCTGAACGGGCAGACGGGGACATGGGGCACCCGGCCCGGCTGGTATCCCGGCACCTCGGTACCTGGGCAGCCCGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123-'3-6,'3-5,4-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.005 C2=0.817
Domain overlap (PFAM):
C1:
PF0029213=PAX=FE(9.4=100)
A:
PF0029213=PAX=FE(56.8=100)
C2:
PF0029213=PAX=PD(6.4=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCAAAAGTCCAAGTGC
R:
TGCCCAGGTACCGAGGTG
Band lengths:
191-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]