RnoEX6018057 @ rn6
Exon Skipping
Gene
ENSRNOG00000004410 | Pax6
Description
paired box 6 [Source:RGD Symbol;Acc:3258]
Coordinates
chr3:95715194-95717321:+
Coord C1 exon
chr3:95715194-95715324
Coord A exon
chr3:95716239-95716454
Coord C2 exon
chr3:95717156-95717321
Length
216 bp
Sequences
Splice sites
3' ss Seq
TGTCCAATTCCCCAATGCAGGTG
3' ss Score
8.77
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTCACAGCGGAGTGAATCAGCTTGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACTCCACCCGGCAGAAGATCGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCAG
Seq A exon
GTGTCCAACGGATGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGAGGCAGTAAGCCAAGAGTGGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAACGGGAGTGCCCGTCCATCTTTGCTTGGGAAATCCGAGACAGATTACTCTCCGAGGGGGTCTGTACCAACGACAATATACCCAGT
Seq C2 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGCTGAACGGACAGACCGGAAGCTGGGGCACCCGCCCTGGTTGGTATCCCGGGACGTCAGTACCAGGGCAACCCACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004410-'15-9,'15-8,19-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(34.4=97.7)
A:
PF0029213=PAX=FE(56.8=100)
C2:
PF0029213=PAX=PD(6.4=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGCGGAGTGAATCAG
R:
CGTGGGTTGCCCTGGTACT
Band lengths:
292-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]