DreEX0054265 @ danRer10
Exon Skipping
Gene
ENSDARG00000006151 | pde11al
Description
phosphodiesterase 11a, like [Source:ZFIN;Acc:ZDB-GENE-031118-106]
Coordinates
chr16:21340637-21350428:-
Coord C1 exon
chr16:21350338-21350428
Coord A exon
chr16:21341004-21341104
Coord C2 exon
chr16:21340637-21340714
Length
101 bp
Sequences
Splice sites
3' ss Seq
AAACATCTTACCTTCAACAGGGA
3' ss Score
6.26
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTGGCTCAGCACTGGCACTGCTGTATGGAACATCTGCCACACTTGAGCATCATCATTTCAACCACGCTGTCATGATCCTGCAGAGTGAG
Seq A exon
GGACACAATATTTTTGCGAATCTGTGCTCCAAGGAATACTGCAACATGATGCAGCTACTGAAACAGGCCATTCTGTCTACAGATCTCACTTTGTATTTCAA
Seq C2 exon
AAAAAGAACAACGTTCTTTGACTGTGTGCTGTCTGGGCAGTTCAGCTGGAGTGATGAAGAACACAGAGACATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006151-'16-21,'16-19,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(12.5=100)
A:
PF0023314=PDEase_I=FE(13.8=100)
C2:
PF0023314=PDEase_I=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGCTCAGCACTGGC
R:
TGTCTCTGTGTTCTTCATCACTCC
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]