DreEX0054450 @ danRer10
Exon Skipping
Gene
ENSDARG00000099791 | pdk3b
Description
pyruvate dehydrogenase kinase, isozyme 3b [Source:ZFIN;Acc:ZDB-GENE-070112-1892]
Coordinates
chr21:40575608-40579127:+
Coord C1 exon
chr21:40575608-40575679
Coord A exon
chr21:40575875-40576059
Coord C2 exon
chr21:40579038-40579127
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGATCTTCAATGTGTTTCAGCTT
3' ss Score
7.62
5' ss Seq
ACAGTGAGA
5' ss Score
3.45
Exon sequences
Seq C1 exon
GTACAGCCAGAGCTTTGAAGAGCTGTTAAAGTTTGAGAAAAGAAGTCCAGAGGATCCTCACACACTTAATGA
Seq A exon
CTTCTTAGAGATGTTGATTAAGATTCGTAACAGGCACAATGACGTGGTGCCCACTATGGCTCAGGGCGTCATTGAATACAAAGAGAAGTTTGGATTTGACCCCTTCATCAGCAGCAACGTGCAGTACTTTCTAGACCGCTTCTACACCAACCGCATTTCTTTCCGCATGCTCATCAACCAGCACA
Seq C2 exon
CTCTTTTGTTTGGTGATGCCGCTTGTCTTGCACAACCGAAACACATCGGGAGCATCGACCCAGCTTGCAACGTGGCTGAGGTGGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099791_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGAAGAGCTGTTAAAGTTTGA
R:
CACCACCTCAGCCACGTTG
Band lengths:
147-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]