DreEX0055018 @ danRer10
Exon Skipping
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24616117-24619896:+
Coord C1 exon
chr15:24616117-24616295
Coord A exon
chr15:24618111-24618183
Coord C2 exon
chr15:24619479-24619896
Length
73 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTGATTCTTCTTAGTAA
3' ss Score
5.11
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CAAATTCAACAGCTCCTTGCACCTCCGCGCTCTGAGGATGGAGAAAAGAGACGCAAACCCGAGAGGGAAACTAGAAGAGGAGGCCGAGCCACGAATCACGACACCTGTGACAGCTGCCGTGAGGGAGGAGATCTGCTCTGCTGTGATCACTGTCCCGCTGCCTTTCACTTGCAATGCTG
Seq A exon
TAATCCACCTTTGAGCAGAGAGATGTTGCCCCCTGGTGACTGGATGTGTCATCGCTGCAGTGTGCGCAAGAAG
Seq C2 exon
AAGCGTGAGCAGAAGGCGGAGCAGGTAAATGGAGCATTGGAGCGGCAGCTATCCAAACGGTCCTCTTCTCCTGCAGCAGAGCTGGAGCTTGGAACCCTGCGTCTGGACGGCCTGCCCTCGGCTGCATCAGGAGGTCTCCGACTAGCTGTTGCACAGGTCCGTCTTCTGGAGCGTCGCACAAGCAGCCGCCCTGGAACACCCACTTCCAATGCATCCACTGATACACCTACTCCCTCAGAACACAACGACGTTGATGAGGACCTGATGGATGTTGAAGAGGATGTGCAGGGCTCTGAATCTGAGAACGCAACACCTCGTCTGAAAAAACCCTTTCAGATGCTGATTGCTGCCGCAATGGAGAGAAACCCTACACAGTTTCAGCTGCCCAGTGAGCTTACATGCACCACTTCACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.000 C2=0.807
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(52.1=41.7)
A:
PF0062824=PHD=PD(45.8=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCCTTTCACTTGCAATG
R:
CTGTGCAACAGCTAGTCGGAG
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]