MmuEX0034714 @ mm9
Exon Skipping
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:77797518-77823296:+
Coord C1 exon
chr11:77797518-77797699
Coord A exon
chr11:77820229-77820301
Coord C2 exon
chr11:77822903-77823296
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCTTTTCCCCACAGTAA
3' ss Score
10.72
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGGAGTCGGAAGCCCGAGAAGGAGTCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGGGATCTCTTGTGCTGCGATCACTGCCCTGCCGCCTTCCACCTCCAGTGCTG
Seq A exon
TAACCCTCCACTGAGTGAAGAGATGTTGCCTCCTGGGGAGTGGATGTGTCACCGGTGTACTGTCCGCCGAAAG
Seq C2 exon
AAACGAGAGCAGAAAAAGGAGCTTGGCCATGTCAATGGACTGGTGGACAAGTCTAGCAAACGGACTACATCCCCCAGCAGTGACACTGACTTGTTGGACAGACCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGGATCCTGGAAAGGAGAGCCAGCCGGCCTGGCACCCCCACATCCAACGCCAGCACAGAGACCCCCACCTCTGAGCATAATGACGTCGATGAGGACATCGTTGACGTGGACGAGGAGCCAGTCGCAGCAGAGCCGGACTATGTGCAGCCCCAGCTGCGGCGGCCTTTTGAGCTGCTGATTGCTGCTGCCATGGAGCGGAACCCTACCCAGTTTCAGTTGCCCAACGAACTGACCTGTACCACTGCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.554 A=0.064 C2=0.788
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(52.1=41.0)
A:
PF0062824=PHD=PD(45.8=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGGGATCTCTTGTGCT
R:
TGCTAGCTGGTCTGTCCAACA
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: