GgaEX1043339 @ galGal3
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
NA
Coordinates
chr19:5859187-5873365:-
Coord C1 exon
chr19:5873177-5873365
Coord A exon
chr19:5861087-5861159
Coord C2 exon
chr19:5859187-5859574
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTGTTTCTCTTGCAGCAA
3' ss Score
11.43
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TCCGCAGCAAATCCAGGCCCTGCTGGCTCCCCCTAAGAGCGAAGATGGGGAGAAGAGGAGCAGGAGGCCTGAGAAGGAGCCCAGGAGAAGTGGCAGGGCCACTAACCACGACAGCTGCGATAGCTGCAAGGAAGGAGGGGACCTGCTGTGCTGCGATCACTGCCCCGCCGCTTTCCACCTCCAGTGCTG
Seq A exon
CAACCCTCCGCTCAGCGAGGAAATGCTGCCTCCAGGGGAGTGGATGTGTCACCGCTGCACCGTGCGCCGAAAG
Seq C2 exon
AAGCGAGAACAGAAGAAAGAGCTGGGGCAGGTAAATGGATTGGTGGACAAAACTGGGAAAAGGACCACCTCCCCAACCAGTGACGCAGACCTGTTGGACAGGTCTAGCAGCAGCATCAGGGCTAATGCGCATGCCAGGATCTTGGAAAGGAGAGCAAGCCGGCCTGGCACTCCCACATCCAATGCCAGCACCGAGACCCCCAACTCAGAGCAGAATGATGTCGATGAGGACATAATTGACGTGGATGATGACTCTGCCATTGCAGAAATGGACTGTGGGCAGCCCCAGCTGAAGCGACCCTTTGAGCTTCTTATTGCTGCTGCCATGGAAAGGAACCCAACGCAGTTCCAGCTGCCGAATGAATTGACCTGCACCACAGCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029-'1-6,'1-4,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=0.080 C2=0.738
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(52.1=39.1)
A:
PF0062824=PHD=PD(45.8=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGATGGGGAGAAGAGGA
R:
CTGCCCCAGCTCTTTCTTCTG
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]