MmuEX0034714 @ mm10
Exon Skipping
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:77984016-78009794:+
Coord C1 exon
chr11:77984016-77984197
Coord A exon
chr11:78006727-78006799
Coord C2 exon
chr11:78009401-78009794
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCTTTTCCCCACAGTAA
3' ss Score
10.72
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGGAGTCGGAAGCCCGAGAAGGAGTCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGGGATCTCTTGTGCTGCGATCACTGCCCTGCCGCCTTCCACCTCCAGTGCTG
Seq A exon
TAACCCTCCACTGAGTGAAGAGATGTTGCCTCCTGGGGAGTGGATGTGTCACCGGTGTACTGTCCGCCGAAAG
Seq C2 exon
AAACGAGAGCAGAAAAAGGAGCTTGGCCATGTCAATGGACTGGTGGACAAGTCTAGCAAACGGACTACATCCCCCAGCAGTGACACTGACTTGTTGGACAGACCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGGATCCTGGAAAGGAGAGCCAGCCGGCCTGGCACCCCCACATCCAACGCCAGCACAGAGACCCCCACCTCTGAGCATAATGACGTCGATGAGGACATCGTTGACGTGGACGAGGAGCCAGTCGCAGCAGAGCCGGACTATGTGCAGCCCCAGCTGCGGCGGCCTTTTGAGCTGCTGATTGCTGCTGCCATGGAGCGGAACCCTACCCAGTTTCAGTTGCCCAACGAACTGACCTGTACCACTGCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791_MULTIEX1-4/4=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.076 C2=0.788
Domain overlap (PFAM):
C1:
PF137711=zf-HC5HC2H=PU(96.7=96.7),PF144461=Prok-RING_1=PU(93.9=50.8)
A:
PF0062824=PHD=PD(45.8=88.0)
C2:
NO
Main Skipping Isoform:
ENSMUST00000049167fB14523
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGGGATCTCTTGTGCT
R:
TGCTAGCTGGTCTGTCCAACA
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types