Special

RnoEX0065300 @ rn6

Exon Skipping

Gene
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64834417-64861035:-
Coord C1 exon
chr10:64860854-64861035
Coord A exon
chr10:64837362-64837434
Coord C2 exon
chr10:64834417-64834810
Length
73 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTCTTTTCCCCACAGTAA
3' ss Score
10.89
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
CAAATCCAGGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGGAGTCGGAAGCCGGAGAAGGAGTCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCTTGTGCTGTGATCACTGCCCTGCCGCCTTCCATCTCCAGTGCTG
Seq A exon
TAACCCTCCACTGAGTGAAGAGATGTTGCCTCCTGGGGAGTGGATGTGTCACCGGTGTACTGTCCGCCGAAAG
Seq C2 exon
AAACGAGAGCAGAAAAAGGAGCTGGGCCACGTCAATGGATTGGTGGACAAGTCTAGCAAACGGACTACATCTCCCAGCAGTGACACTGACTTGTTGGACAGACCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGGATCCTGGAAAGGAGAGCCAGCCGGCCTGGCACCCCCACATCCAACGCCAGCACAGAGACCCCCACCTCTGAGCATAATGACGTCGATGAGGACATCATTGACGTGGACGAGGAGCCAGTAGCAGCAGAGCCGGACTATGTGCAACCCCAGCTGCGGCGGCCTTTTGAGCTGCTGATTGCTGCTGCCATGGAGCGGAACCCTACCCAATTTCAGTTGCCCAATGAACTGACTTGTACCACTGCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566_MULTIEX2-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.574 A=0.080 C2=0.788
Domain overlap (PFAM):

C1:
PF0062824=PHD=PU(52.1=41.0)
A:
PF0062824=PHD=PD(45.8=88.0)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAGGAAGGTGGAGATC
R:
TGCTAGCTGGTCTGTCCAACA
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]