GgaEX1043339 @ galGal4
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:5895277-5909448:-
Coord C1 exon
chr19:5909267-5909448
Coord A exon
chr19:5897177-5897249
Coord C2 exon
chr19:5895277-5895664
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTGTTTCTCTTGCAGCAA
3' ss Score
11.43
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CAAATCCAGGCCCTGCTGGCTCCCCCTAAGAGCGAAGATGGGGAGAAGAGGAGCAGGAGGCCTGAGAAGGAGCCCAGGAGAAGTGGCAGGGCCACTAACCACGACAGCTGCGATAGCTGCAAGGAAGGAGGGGACCTGCTGTGCTGCGATCACTGCCCCGCCGCTTTCCACCTCCAGTGCTG
Seq A exon
CAACCCTCCGCTCAGCGAGGAAATGCTGCCTCCAGGGGAGTGGATGTGTCACCGCTGCACCGTGCGCCGAAAG
Seq C2 exon
AAGCGAGAACAGAAGAAAGAGCTGGGGCAGGTAAATGGATTGGTGGACAAAACTGGGAAAAGGACCACCTCCCCAACCAGTGACGCAGACCTGTTGGACAGGTCTAGCAGCAGCATCAGGGCTAATGCGCATGCCAGGATCTTGGAAAGGAGAGCAAGCCGGCCTGGCACTCCCACATCCAATGCCAGCACCGAGACCCCCAACTCAGAGCAGAATGATGTCGATGAGGACATAATTGACGTGGATGATGACTCTGCCATTGCAGAAATGGACTGTGGGCAGCCCCAGCTGAAGCGACCCTTTGAGCTTCTTATTGCTGCTGCCATGGAAAGGAACCCAACGCAGTTCCAGCTGCCGAATGAATTGACCTGCACCACAGCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029-'2-19,'2-12,6-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=0.200 C2=0.777
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(52.1=41.0)
A:
PF0062824=PHD=PD(45.8=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGATGGGGAGAAGAGGA
R:
CTGCCCCAGCTCTTTCTTCTG
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]