DreEX0055860 @ danRer10
Exon Skipping
Gene
ENSDARG00000062748 | pkn1b
Description
protein kinase N1b [Source:ZFIN;Acc:ZDB-GENE-070424-87]
Coordinates
chr3:5868579-5876034:-
Coord C1 exon
chr3:5875892-5876034
Coord A exon
chr3:5872692-5872799
Coord C2 exon
chr3:5868579-5869236
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGAGCAGAGTGTGTGTTTAGTCT
3' ss Score
-5.11
5' ss Seq
CGGGTAACA
5' ss Score
5.3
Exon sequences
Seq C1 exon
GAATGGGTCACGGGGACCGCACCAGCACTTTCTGTGGGACTCCAGAGTTTCTGGCTCCTGAGGTTTTGACGGACACATCCTACACGCGGGCCGTGGACTGGTGGGGTCTCGGAGTGCTCATTTATGAGATGATGGTCGGAGAG
Seq A exon
TCTCCTTTCCCAGGTGACGATGAGGAGGAGGTGTTCGACAGCATCGTGAATGATGAAGTTCGATACCCGAGATTCCTCTCCACTGAAGCCATTGGCATCATGAGACGG
Seq C2 exon
AATATGGACTGGGATGCTCTTCTGCAGCGAAAGGTTCCTCCTCCATTTGTTCCTGCAGTCGCTACCAGTGAAGATGTCAGTAATTTCGACGCAGAGTTTACGAACGAGGCTCCAACACTGACGCCGCCTCGAGAACGCCGGAGCCTTTCACGCAAAGACCAGGACTATTTTAAGGACTTTGATTACGTCTCTGACTTCTGCTAGTGCGCACACTGAAGCTGCTAGCTGTGAGAGGAAAAAACTAGCAGAGATCTCGCCCCCTAGTGGCCATCTAGGGTGCTCGGCGAGAGGATTCGCTCAAACCCCAGGCGACACGGTTGCAGGTACATCAGATGTGAAGAGATGGAAGAATCCAGATAATGTGAAGCTCTGTGGTGATTTTAACAGAAGCAGGATCTCAAGTGGTCGGTTCGATTAATCCTTGGCCAACATCTTTGGAACAACTTTGGAAGCTAATGAAGTCAACTGTGATGAAGAGATGACTTTTTCTTTTAGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062748_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.328
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0043319=Pkinase_C=WD(100=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTTTCTGTGGGACTCC
R:
GTCAGTGTTGGAGCCTCGTTC
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]