DreEX0055868 @ danRer10
Exon Skipping
Gene
ENSDARG00000101983 | pkn2
Description
protein kinase N2 [Source:ZFIN;Acc:ZDB-GENE-061207-42]
Coordinates
chr2:22816064-22821181:+
Coord C1 exon
chr2:22816064-22816206
Coord A exon
chr2:22816462-22816569
Coord C2 exon
chr2:22821101-22821181
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTAGATTCATGTTTCCGTAGTCT
3' ss Score
3.53
5' ss Seq
AGGGTTGGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
GAATGGGTTATCGGGACAGAACCAGCACTTTTTGCGGCACTCCAGAGTTTCTGGCACCTGAGGTGTTAACTGAAACATCCTATACACGAGCTGTGGACTGGTGGGGCCTCGGCGTACTCATTTTTGAGATGCTTGTCGGAGAG
Seq A exon
TCTCCATTTCCTGGTGATGATGAAGAAGAGGTGTTTGACAGCATTGTGAATGACGAGGTTCGCTACCCACGAGTCCTCTCAACAGAAGCCATCTCCATCATGAGAAGG
Seq C2 exon
TTGTTAAGAAGGAATCCAGAGAGACGGCTTGGAGCTGCTGAACGAGATGCAGAAGATGTGAAGAAACATCTGTTCTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101983-'20-22,'20-20,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.111
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.1=100)
A:
PF0006920=Pkinase=FE(13.5=100)
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTATCGGGACAGAACCA
R:
GATGTTTCTTCACATCTTCTGCA
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]