DreEX0056163 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5518032-5528660:+
Coord C1 exon
chr16:5518032-5518104
Coord A exon
chr16:5523397-5523411
Coord C2 exon
chr16:5528571-5528660
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCACTGATTGGCTGCTCCAGCAC
3' ss Score
4.39
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCCTTTCGCAGATGAACGGGACAGAGTGCAGAAGAAGACTTTCACAAAATGGGTGAACAAACACCTAATAAAG
Seq A exon
CACTGGAGGTCTGAG
Seq C2 exon
ACTCAGCGTCACGTGAATGACCTGTACGAAGATCTCCGAGATGGACATAACCTGATCTCCCTCCTGGAGGTCCTCTCTGGAGAGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(12.3=52.0)
A:
PF0030726=CH=FE(3.8=100)
C2:
PF0030726=CH=FE(28.7=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACGGGACAGAGTGCAG
R:
TCGGAGATCTTCGTACAGGTCA
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]