DreEX0056165 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5528571-5534861:+
Coord C1 exon
chr16:5528571-5528660
Coord A exon
chr16:5530633-5530668
Coord C2 exon
chr16:5534784-5534861
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTTTCTGGCTGAAGCCG
3' ss Score
3.69
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACTCAGCGTCACGTGAATGACCTGTACGAAGATCTCCGAGATGGACATAACCTGATCTCCCTCCTGGAGGTCCTCTCTGGAGAGACGCTG
Seq A exon
CCGAGGGAGCGGGACGTTGTGCGGAGCGTGCGGTTG
Seq C2 exon
CCTCGTGAGAGAGGACGCATGCGATTCCACAAACTGCAGAATGTGCAGATAGCACTGGATTTCCTCAGACACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.3=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSDART00000160008fB4721
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCGTCACGTGAATGAC
R:
GTTTGTGGAATCGCATGCGTC
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]