DreEX0056322 @ danRer10
Exon Skipping
Gene
ENSDARG00000030633 | plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
Coordinates
chr9:28359713-28375155:+
Coord C1 exon
chr9:28359713-28359858
Coord A exon
chr9:28361996-28362189
Coord C2 exon
chr9:28375092-28375155
Length
194 bp
Sequences
Splice sites
3' ss Seq
ACACTGCTTCTGTGGCTCAGGTG
3' ss Score
6.35
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGTCAGAGGCCAGTGGGTCTATCACGGGGCAAGGCCAAAGTTTGCGCCTACAGCGGCTGGTACTACTGCACAAGTTGTCACCAGGACAACCTCTTCCTCATACCTGCCCGTCTGTTGCACAACTGGGACACTAATAGACACAAG
Seq A exon
GTGTCGAAACAAGCAAAGGAGTTTCTGGAGTTTGTTTATGAGGAGCCTCTACTGGATGTCCAGCAGTTGAACCCGTGTCTGTATGAGCATTGTGAGCCGTTGGCGGCTGTTCTCAAACTGAGACAGCAACTCCAGTCTCTCAGGGCCTATCTCTTCAGCTGCCGGGCCACAGTTGCAGAAGATCTGCGGCGCAG
Seq C2 exon
GATCTTCCCCAGAGAATACCTGTTGCAGCATGTGCATCTTTACTCATTGGCAGATTTGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030633_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.2=71.4)
A:
PF139011=DUF4206=FE(31.4=100)
C2:
PF139011=DUF4206=FE(10.3=100)
Main Skipping Isoform:
ENSDART00000046880fB4744
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCAGAGGCCAGTGGGTC
R:
AATCTGCCAATGAGTAAAGATGCAC
Band lengths:
202-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]