RnoEX0067124 @ rn6
Exon Skipping
Gene
ENSRNOG00000023760 | Plekhm3
Description
pleckstrin homology domain containing M3 [Source:RGD Symbol;Acc:1307151]
Coordinates
chr9:71561295-71592838:-
Coord C1 exon
chr9:71592693-71592838
Coord A exon
chr9:71583410-71583603
Coord C2 exon
chr9:71561295-71561358
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGCCAAGACTTGTTTTGCAGGTG
3' ss Score
3.92
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGTGCCAGCGACCCATTGGTCTGTCCAATGGCAAGGCCAAGGTGTGCAATTACAGTGGGTGGTACTACTGCAGCAGCTGCCACGTGGACGACAGCTTTCTCATCCCAGCACGCATAGTCCACAACTGGGACACCTCAAAATACAAG
Seq A exon
GTGTCCAAACAGGCCAAGGAGTTTCTGGAGTACGTGTACGAAGAGCCCCTGATCGACATCCAGCAGGAGAACCCAATGCTCTACCTCCATGCTGAGCCTCTGGCCACCGTTGCACGGCTGCGGCAGCGGCTGAAGTCACTCCGAGCCTATTTGTTCAGCTGCAGGGCGGCAGTGGCGGAGGATCTGCGCCGCAG
Seq C2 exon
AATTTTCCCCAGAGAATACCTCCTTCAGCAGATCCACCTGTACTCTCTCGCTGACCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023760-'11-10,'11-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.2=71.4)
A:
PF139011=DUF4206=FE(31.4=100)
C2:
PF139011=DUF4206=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAGCGACCCATTG
R:
GGTCAGCGAGAGAGTACAGGT
Band lengths:
202-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]