GgaEX1044509 @ galGal3
Exon Skipping
Gene
ENSGALG00000008479 | PLEKHM3
Description
NA
Coordinates
chr7:13122865-13142121:+
Coord C1 exon
chr7:13122865-13123010
Coord A exon
chr7:13130685-13130878
Coord C2 exon
chr7:13142058-13142121
Length
194 bp
Sequences
Splice sites
3' ss Seq
ACTGGTTTTATGTCTTTCAGGTA
3' ss Score
10.68
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTGTCAGCGCTCCATAGGCTTGTCCAATGGCAAAGCCAAGGTGTGTAGCTACAGTGGATGGTATTATTGCTGTACCTGTCATGTGGATGACAGCTTCCTCATCCCTGCACGACTGGTTCATAACTGGGATACTTCCAAGTACAAG
Seq A exon
GTATCAAAGCAAGCCAAAGAGTTTCTGGAATATGTGTATGAGGAGCCACTGATTGATATCCAGCAGGAAAATCCCATGTTGTACAAGCACGTTGAATCTCTGGCAACTGTTGTCCGCCTGAGACAGCAGTTAAAATCTCTGCGAGCCTATTTGTTCAGCTGCAGAGCAGCAGTGGCTGAAGATCTACGAAGAAG
Seq C2 exon
GATCTTTCCAAGAGAGTATCTTCTTCAGCAAATCCATCTTTATTCTCTGGCAGACCTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008479-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145671=SUKH_5=FE(55.8=100),PF139011=DUF4206=PU(24.0=71.4)
A:
PF145671=SUKH_5=PD(18.6=24.6),PF139011=DUF4206=FE(43.8=100)
C2:
PF139011=DUF4206=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAGCGCTCCATAGG
R:
CTGCTGGAGGTCTGCCAGAG
Band lengths:
210-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]