MmuEX0035814 @ mm10
Exon Skipping
Gene
ENSMUSG00000051344 | Plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:MGI Symbol;Acc:MGI:2443627]
Coordinates
chr1:64861187-64892897:-
Coord C1 exon
chr1:64892752-64892897
Coord A exon
chr1:64883129-64883322
Coord C2 exon
chr1:64861187-64861250
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGCCAGGGCTTGTTTCGCAGGTA
3' ss Score
4.37
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGTGCCAGCGATCTATTGGTCTCTCTAACGGAAAGGCCAAGGTGTGCAATTATAGCGGGTGGTACTACTGCAGCAGCTGCCATGTGGACGACAGCTTTCTCATCCCAGCACGCATAGTTCACAACTGGGACACCTCAAAATACAAG
Seq A exon
GTATCCAAGCAGGCCAAGGAGTTTCTGGAGTATGTGTACGAAGAACCTCTGATCGACATCCAGCAGGAGAACCCCATGCTGTACCTCCATGCTGAGCCACTGGCCACCGTTGTACGGCTTCGACAGCGGTTGAAGTCACTCCGGGCCTATTTGTTCAGCTGCCGGGCAGCAGTGGCGGAGGATCTGCGCCGCAG
Seq C2 exon
AATTTTCCCCAGAGAATATCTCCTTCAACAGATCCACCTGTACTCTCTCGCTGACCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051344_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=PU(17.2=71.4)
A:
PF139011=DUF4206=FE(31.4=100)
C2:
PF139011=DUF4206=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCAGCGATCTATTGGTC
R:
GGTCAGCGAGAGAGTACAGGT
Band lengths:
202-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types