DreEX0057411 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3535987-3537773:+
Coord C1 exon
chr6:3535987-3536031
Coord A exon
chr6:3537478-3537538
Coord C2 exon
chr6:3537686-3537773
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTCCATTTCCATGTCAACAGCTC
3' ss Score
7.17
5' ss Seq
ACTGTAATT
5' ss Score
-0.86
Exon sequences
Seq C1 exon
GGAATGGCAGAGGTGGTGAATCTATATATGGAGGTTTCTTTGAAG
Seq A exon
CTCCTTTAGAAGTATTATTCCCTGGAAAAAGAAGACCTGTTGAATACTTATTTCCCCCACT
Seq C2 exon
ATGAAAGTTTCTCAATGAAACATACCAAGGAGTTCCTGCTATCGATGGCCAACAGAGGGAAAGACACCAACGGCTCACAGTTCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.295
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.2=100)
A:
PF0016016=Pro_isomerase=PD(12.1=57.1)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
ENSDART00000065256fB4827
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGCAGAGGTGGTGAAT
R:
TAAAGAACTGTGAGCCGTTGGT
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]