DreEX0057488 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36322297-36324587:-
Coord C1 exon
chr3:36324394-36324587
Coord A exon
chr3:36322470-36322620
Coord C2 exon
chr3:36322297-36322380
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATTTTAAATCCATTTTTCAGATC
3' ss Score
8.94
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GACATCGCGTCTGAGCTGAGAAGCAAAAGATCTATCATCACACAGACTGAGCAGAACCTGAGAGACGCTAAAACCAGCTGCAGTAACATGACCAATAAAGTGCAAGAGCACTGTCCTGATATCGAGAGGCAAGAGGCGGAGGTTCAGAAAATGACCAAACGCTTTGACAACCTGAACCGACAGACAGAAGCAAG
Seq A exon
ATCACAGCATCTGCAAAGAGCTAAAACAGCCTACTCCAACTACCACAATGACTATGAAAACCTCAATAGCTGGCTTTCCCGGATACCAAACTATGAGCCACGTGAAACTGATGACGTTAGACAGATTGACTCAAAACTGAAAAATCAAAGA
Seq C2 exon
AATCTGCTCTCTGACATCGCGAGGAAGGAATCAGACCTAAACAATGTGTCAAGAAATGCGCAGCTTTATCAGCAAGCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'24-23,'24-22,25-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=0.725 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCGTCTGAGCTGAGAAG
R:
AGCTGCGCATTTCTTGACACA
Band lengths:
257-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]