MmuEX6060706 @ mm9
Exon Skipping
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5093289-5096912:-
Coord C1 exon
chr16:5096719-5096912
Coord A exon
chr16:5094502-5094652
Coord C2 exon
chr16:5093289-5093372
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGACTGGTTGGTCCCCACAGGGC
3' ss Score
8.68
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCCATGGCTTCTGAGCTGCAGGCCCACAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTACAGGTGGCCAAGCAGTGTTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGGCAGGAGGCCGAGGTGCACAAGCTCAACCAACGTTTCAACAACCTCAGCCAGCAGGTGGAACGGAG
Seq A exon
GGCCCAGAGCCTGCAGAGTGCCAGGGCTGCCTACGATGAATACTGCAGTGGTTACAACCGTGTGCTCCAGTTTTTGGCCAAGACTCCCAGTTATGAGCCCCAGGAGACAGACAGCCTCGGCCAGATGGAGACCAAGCTCAAGAACCAGAAG
Seq C2 exon
AACTTGCTTGATGAGCTAGCAAGCAGGGAACAGGAGGTGCAGAAGGTCTATGCAGATTCCCAGCAGTACCAGCAAGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.333 C2=0.179
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(62.1=100)
A:
PF0043516=Spectrin=PD(5.8=11.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGAGGTGGAACAGAAC
R:
CTTCACCGCTTGCTGGTACTG
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: