RnoEX6046160 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10680533-10683908:+
Coord C1 exon
chr10:10680533-10680726
Coord A exon
chr10:10682488-10682638
Coord C2 exon
chr10:10683825-10683908
Length
151 bp
Sequences
Splice sites
3' ss Seq
GACTGGCTTTGTCCCCTCAGGGC
3' ss Score
10.09
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCCATGGCTTCTGAGCTGCAGGCCCAGAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTGCAGGTGGCCAAGCAGTGCTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGCCAGGAGGCTGAGGTACACAAGCTCAACCAGCGTTTCAACAACCTCAATCAGCAGGTGGAACGCAG
Seq A exon
GGCCCAGAGCCTGCAGAGTGCCAGGGATGCCTACAGTGAATACTGCCGAGGTTATGACCATGTGCTTCAGTTCTTGGTCAAGACTCCCAGTTATGAGCCCCAGGAGACAGACAGCCTCAGCCAGATGGAGACCAAACTGAAGAACCAGAAG
Seq C2 exon
AACTTGCTTGATGAGATAGCAAGCATGGAACAAGGGGCGCAGAAGGTCTACGCAGACTCCCAACAGTACCAGCAAGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.392 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTGAGGTGGAACAGAAC
R:
CTTCACTGCTTGCTGGTACTGT
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]