GgaEX6013102 @ galGal4
Exon Skipping
Gene
ENSGALG00000002201 | PPL
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV96]
Coordinates
chr14:13259565-13260889:-
Coord C1 exon
chr14:13260696-13260889
Coord A exon
chr14:13259935-13260085
Coord C2 exon
chr14:13259565-13259648
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGAGTCCATTTCCCCTACAGAAC
3' ss Score
9.06
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
Seq A exon
AACACAGACCCTGCAGAAAGCAAAGAGTGCCTATTCCAACTACCGCACAAACTATGACAAAATCAACCAGTTCCTTTGCAACATACCCAACTACGAGCCGCAGGAGACAGACAACATCCAGCAGGTGGAAGTGAAGCTGAAGAACCAAGCG
Seq C2 exon
GCGCTCCTTGGTGACATCGCAAGCAAAGAACAGGAGGTGCAAAAGGTCTCTGCCACAGCTCAGCAGTACCAGCAGGCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'20-22,'20-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGCTCTGAGCTCCAATC
R:
CTGTGGCAGAGACCTTTTGCA
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]