GgaEX6013102 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14026196-14027520:-
Coord C1 exon
chr14:14027327-14027520
Coord A exon
chr14:14026566-14026716
Coord C2 exon
chr14:14026196-14026279
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGAGTCCATTTCCCCTACAGAAC
3' ss Score
9.06
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
Seq A exon
AACACAGACCCTGCAGAAAGCAAAGAGTGCCTATTCCAACTACCGCACAAACTATGACAAAATCAACCAGTTCCTTTGCAACATACCCAACTACGAGCCGCAGGAGACAGACAACATCCAGCAGGTGGAAGTGAAGCTGAAGAACCAAGCG
Seq C2 exon
GCGCTCCTTGGTGACATCGCAAGCAAAGAACAGGAGGTGCAAAAGGTCTCTGCCACAGCTCAGCAGTACCAGCAGGCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGCTCTGAGCTCCAATC
R:
CTGTGGCAGAGACCTTTTGCA
Band lengths:
250-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]