DreEX0060185 @ danRer10
Exon Skipping
Gene
ENSDARG00000074246 | rab14
Description
RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
Coordinates
chr5:62696924-62698101:+
Coord C1 exon
chr5:62696924-62697024
Coord A exon
chr5:62697711-62697769
Coord C2 exon
chr5:62698048-62698101
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTCTGCTTTCTAGAGC
3' ss Score
10.23
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCACAGCAGCAGCACTTTTAGAGGAAGAAAGCGGCCGGACGGCTCACAGACGCCAAGAACCAACCCAAGCCTCCAAAAACCACTTGAATTAATATTTTTAG
Seq A exon
AGCCAAAATGACGACCGCACCATATAACTATTCCTATATTTTCAAATATATCATTATTG
Seq C2 exon
GTGACATGGGGGTTGGCAAGTCCTGTTTACTCCACCAGTTCACAGAAAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074246_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(7.4=27.8)
C2:
PF0007117=Ras=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGCACTTTTAGAGGA
R:
GGTGGAGTAAACAGGACTTGCC
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]