GgaEX1047659 @ galGal4
Exon Skipping
Gene
ENSGALG00000001474 | RAB14
Description
Ras-related protein Rab-14 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKU5]
Coordinates
chr17:8380165-8392564:-
Coord C1 exon
chr17:8392378-8392564
Coord A exon
chr17:8384594-8384652
Coord C2 exon
chr17:8380165-8380252
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTGTTTTTTAGTGC
3' ss Score
10.07
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATCTTGGATAAGGGGGGTGATGGGGGCGCAGTGGAGCCAGCGGAGCAGAGCCTGAGAGAGCGCCGGAGTGAGGTGGGGACTCGGCCCGGCCGCTGCCCAGCACGAGCAGAGCGCTCCAGTGCCCGTAGGGGGACCGGGCTGCCGCCGGCAGAGCCACGCTGCACAGCCACACGCTCCCGGAGCCCAG
Seq A exon
TGCCACAATGGCAACTGCACCTTACAACTACTCCTACATCTTTAAGTACATCATTATTG
Seq C2 exon
GTGATAATCCTCATAGGAAATAAAGCAGATCTGGAAGCACAGAGGGATGTTACATATGAAGAAGCCAAACAATTTGCTGAAGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474_MULTIEX1-1/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(20.0=27.8)
C2:
PF0007117=Ras=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCACGAGCAGAG
R:
ACATCCCTCTGTGCTTCCAGA
Band lengths:
144-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]