MmuEX6100829 @ mm10
Exon Skipping
Gene
ENSMUSG00000026878 | Rab14
Description
RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
Coordinates
chr2:35191512-35201120:-
Coord C1 exon
chr2:35200760-35201120
Coord A exon
chr2:35192621-35192679
Coord C2 exon
chr2:35191512-35191565
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATAGTTTTCTTTGTTTTTAGTGC
3' ss Score
7.67
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACGAAGGGGCGTGGCCGTCAGGTTAGTCTCCACCACCCTCTTCCGGGCTCCGCTGGCTGCGCGCGCATCCTCCCCCCTTCTTTTGTGGTCCGGCCCATTGCGAGGGTGACAGGAAACCCTGTGCAGGGAGCGCCGCCATCTTGGGCCAGCCCGAGGAAGATCCTGAGGGAGCCGCAGGAGCAGCCGCCGCCGCCACCGCGACTGCCACCCGAGTGTCTGCAACCTCCGGCCAGCCCGCCTACCTGCCAGGGCCTCGGCTGACGGATTCCGGCCTCCCTCCCGCCGCGTCCGCCCTCCGCTTCCTCGTCCTGACGTCCCCCTCCCGTCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAG
Seq A exon
TGCCACCATGGCAACTGCACCGTACAACTACTCTTACATCTTTAAGTATATTATTATTG
Seq C2 exon
GGGATATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026878-'0-6,'0-2,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(3.1=27.8)
C2:
PF0007117=Ras=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGGCTGACGGATTC
R:
AGCAAGCAAGATTTTCCTACTCCC
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types