HsaEX0051570 @ hg19
Exon Skipping
Gene
ENSG00000119396 | RAB14
Description
RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524]
Coordinates
chr9:123954449-123964147:-
Coord C1 exon
chr9:123963917-123964147
Coord A exon
chr9:123955639-123955697
Coord C2 exon
chr9:123954449-123954502
Length
59 bp
Sequences
Splice sites
3' ss Seq
AGAGATTTCTTTGTTTTTAGTGC
3' ss Score
5.14
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATCTTGGACCAGCCCGAGGAAGATACTGAGGGAGCACAGGAGCAGTCACCGCTGCCACTGCTACTGCCGCTACTGCTGCCGGCGCGTCTGCACCTCTCGGCCTGCCAGTGTACCTGCCGGCGCCTCGGTCGACCGCCCCCGCCCCCTCTCCCGCTGCGTCCGCACTCCTGTTCCTGGTCCTGACGCCCCCCTCCCGCCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAG
Seq A exon
TGCCACCATGGCAACTGCACCATACAACTACTCTTACATCTTTAAATATATTATTATTG
Seq C2 exon
GGGACATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119396-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(3.1=27.8)
C2:
PF0007117=Ras=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCCAGTGTACCTGC
R:
AGATTTTCCTACTCCCATGTCCC
Band lengths:
155-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)