RnoEX6016597 @ rn6
Exon Skipping
Gene
ENSRNOG00000018901 | Rab14
Description
RAB14, member RAS oncogene family [Source:RGD Symbol;Acc:620881]
Coordinates
chr3:14384448-14395362:-
Coord C1 exon
chr3:14394926-14395362
Coord A exon
chr3:14385472-14385530
Coord C2 exon
chr3:14384448-14384501
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATAGTTTTCTTTGTTTTCAGTGC
3' ss Score
8.26
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTCCCCGCCCCTTCAGGCGTGAGGACCAGTGGGACGGGCTGAGGCCGAGGCGGGTCTACTCCAAAGGGGCAAACTGAGGAAGGGGCGTGGCCGTCAGGTCGGTCTCCAACACCCTCTTCCGGGCTCCGCTGGCTGCGCGCGCATCCTCCCCCCTTCTTTTGTGGTCCGGCCCATTGCGAGGGTGACAGGAAACCCTGTGCAGGGAGCGCCGCCATCTTGGGCCAGCCCGAGGAAGATCCTGAGGGAGCCGCAGGAGCAGCCGCCGCCACCACCGCGACTACCTCCCGAGTGTCTGCAACCTCAGGCCAGCCCGCCTTCCTGCCAGTGCCTTGGCCGACGGATTCCGGCCGCCCTCCCGCCGCGTCCGCCCTCCGCTTCCTCGTCCTGACGTCCCCCTCCCGTCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAG
Seq A exon
TGCCACCATGGCAACTGCACCGTACAACTACTCTTACATCTTTAAGTATATTATTATTG
Seq C2 exon
GGGATATGGGAGTAGGAAAATCTTGCTTGCTTCATCAATTTACAGAAAAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018901-'0-8,'0-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(6.6=27.8)
C2:
PF0007117=Ras=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGCCGACGGATTC
R:
AGCAAGCAAGATTTTCCTACTCCC
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]