GgaEX1047659 @ galGal3
Exon Skipping
Gene
ENSGALG00000001474 | RAB14_CHICK
Description
NA
Coordinates
chr17:9088592-9097439:-
Coord C1 exon
chr17:9097337-9097439
Coord A exon
chr17:9089250-9089308
Coord C2 exon
chr17:9088592-9088645
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTGTTTTTTAGTGC
3' ss Score
10.07
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCGGCCGCTGCCCAGCACGAGCAGAGCGCTCCAGTGCCCGTAGGGGGACCGGGCTGCCGCCGGCAGAGCCACGCTGCACAGCCACACGCTCCCGGAGCCCAG
Seq A exon
TGCCACAATGGCAACTGCACCTTACAACTACTCCTACATCTTTAAGTACATCATTATTG
Seq C2 exon
GGGACATGGGTGTAGGAAAGTCCTGTTTGCTTCACCAATTCACGGAAAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474-'0-2,'0-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(15.2=27.8)
C2:
PF0007117=Ras=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCACGAGCAGAG
R:
CCGTGAATTGGTGAAGCAAACA
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]