DreEX0060189 @ danRer10
Exon Skipping
Gene
ENSDARG00000035188 | rab14l
Description
RAB14, member RAS oncogene family, like [Source:ZFIN;Acc:ZDB-GENE-040426-1207]
Coordinates
chr5:71392033-71394233:-
Coord C1 exon
chr5:71394176-71394233
Coord A exon
chr5:71393277-71393335
Coord C2 exon
chr5:71392033-71392210
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTTCAGAGC
3' ss Score
8.82
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGATCCGGATAAGCATCACCTCAACACACTGATTTCCAGCAGAAACACGCGAGCACAG
Seq A exon
AGCGGCCATGGCCACTGCACCTTACAACTACTCCTACATCTTCAAGTACATCATCATTG
Seq C2 exon
TCATGGCGGACTGTCCGCACACTATCGGCGTGGAGTTCGGCACCAGGATCATGGAGGTGAGCGGACAGAAGATCAAGCTGCAGATCTGGGACACGGCGGGTCAGGAGCGCTTCAGAGCCGTCACACGCAGCTACTATAGAGGAGCCGCTGGAGCACTGATGGTCTACGACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035188_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007117=Ras=PU(3.1=27.8)
C2:
PF0007117=Ras=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCACCTCAACACACTGA
R:
GTGTCCCAGATCTGCAGCTTG
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]