DreEX0062188 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22981880-22982605:+
Coord C1 exon
chr9:22981880-22982029
Coord A exon
chr9:22982133-22982232
Coord C2 exon
chr9:22982338-22982605
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTGGTTTTGTTGTAGAGT
3' ss Score
8.26
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
ACCACTCAGAAGGCCATGATCAGCACATGGTCCAGGCTTTACAAGGCTTTTGCCCGTTGCTCAGCTTTGGTTGCCACAGCAGAGGAGAATACATGCTGTGAAGAGTTGTGTGTCAAGATCTCTGCCTCTCTTGACCGTGAAGCTCTAAAA
Seq A exon
AGTCTGTCTATGCTAGATGCAATAGCACACATCTTGCTCATCATCGTTGAGAGTATGGACTTTTCTCCATATACCCCTCAGTTCCAGCAGAAGATGAAAT
Seq C2 exon
CTCCTCGTACACCCATGAGTTGGGTACGCAAGAGAAGCAGAGCCCTCGGGAATCTCTCAACCTTCCACACTCTTCTGATACAGACTCTAGAGGCTTTTCTCACTGCAGACCATTCAGAAGAATCTGCAGAGCCTTTAAATGGAATTGGCTCTGCCTTGGTGTCAATCTTGACCTCTCTTTTCACTAATATTACCCTTCCCTCATTCTTACAAGAGGTGCTCTCCAGCCTCACCAAACCACTTGCACGTCTTTATGAGCAGTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'24-35,'24-33,25-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCCATGATCAGCACA
R:
TGGTCTGCAGTGAGAAAAGCC
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]