GgaEX1049346 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34658526-34662559:+
Coord C1 exon
chr7:34658526-34658675
Coord A exon
chr7:34659226-34659325
Coord C2 exon
chr7:34662460-34662559
Length
100 bp
Sequences
Splice sites
3' ss Seq
GACTTCTGTTTCCTCCTCAGATG
3' ss Score
10.96
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCAACTATGAAATCCTTGCTGCGTGCTTGGTCAGACCTCTACAGAGCATTTGCTCGCTGTGCTGCTTTGGTTGCAACAGCAGAAGAAAACCTGTGCTGTGAAGAACTGTGTGCCAAAATAATATCTGGGCTAGAAGGTGAAACTCCAGTA
Seq A exon
ATGTCTGCAATGCTGGATGGTCTCACCCATGTTGTGGCAGTTATGGTGGACTGCATCAACTTTGCACCCTATGGTACTAAATATCAGCCCAAAAATAGAT
Seq C2 exon
ACCTGTGTTAAGCCAAGCCAAACAGAAAATGCCCCTCTTGCTGCCTGGTTTTGAAAGCATTGAGATAGCTGACGAACAAAGCGGCCCATTCTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-18/22=17-22
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAATCCTTGCTGCGTGCT
R:
CATCAGAGAATGGGCCGCTTT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]