GgaEX1049346 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36785076-36786809:+
Coord C1 exon
chr7:36785076-36785225
Coord A exon
chr7:36785776-36785875
Coord C2 exon
chr7:36786545-36786809
Length
100 bp
Sequences
Splice sites
3' ss Seq
GACTTCTGTTTCCTCCTCAGATG
3' ss Score
10.96
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCAACTATGAAATCCTTGCTGCGTGCTTGGTCAGACCTCTACAGAGCATTTGCTCGCTGTGCTGCTTTGGTTGCAACAGCAGAAGAAAACCTGTGCTGTGAAGAACTGTGTGCCAAAATAATATCTGGGCTAGAAGGTGAAACTCCAGTA
Seq A exon
ATGTCTGCAATGCTGGATGGTCTCACCCATGTTGTGGCAGTTATGGTGGACTGCATCAACTTTGCACCCTATGGTACTAAATATCAGCCCAAAAATAGAT
Seq C2 exon
CTCCACAGACACCTACTGACTGGTCTAAGAAGAAAAGGGAGCCCCTTGGGAAGCTCTCCTCCCTGTTCAAGCTTCTGGTGATGCTACTGGATTCCTTCCATGCTCTCAGTTCTGAAGAAACCTGCCCAGAACCATTGGCCTCTGTCGGTCATTCACTTATTGCTGTTCTTCACAACATCATCAGCCACGTTTCATTGCCTTCAATGATTGGGACTATGTTTGCAGTTTTTTCAAAACCACTGGCAGTATTTTATGAAAAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAAGAACTGTGTGCCA
R:
AAGGCAATGAAACGTGGCTGA
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]