MmuEX6101192 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52098357-52103697:+
Coord C1 exon
chr2:52098357-52098506
Coord A exon
chr2:52098853-52098952
Coord C2 exon
chr2:52103433-52103697
Length
100 bp
Sequences
Splice sites
3' ss Seq
AATATTAAATTTCTTCCTAGGAT
3' ss Score
7.15
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGTACCATGAAAGCTTTACTTAAAACTTGGTCAGAATTGTATAGAGCATTTACTCGCTGTGCTTCTTTGGTGGCAACAGCAGAAGAGAATCTGTGCTGTGAAGAACTTTCTTCTAAAATAATGTGCAGTTTGGAAGATGAAGTCCTTTCA
Seq A exon
GATTTGCTATTCTTGGACAGGATCTCTCATATTATTATTGTAATGGTTGATTGTATCGACTTTTCACCATATAATAAGAAATACCAGCCAAAAATCAAAT
Seq C2 exon
CACCGCAGAGATCTTCAGATTGGTCCAGAAAGAAGAAGGAGCCTCTAGGGAAATTGGCTTCTTTATTTAAGCTAATTGTGAAAGTCATCGATACTTTCCACACTCTAAGCCTCAAGGAAACATTCTCTGATACACTGCTTGCTATTGGTAACTCTATCATTAGCATGCTTTCCAATGTATTTGGACATATTTCCTTGCCCTCTATGATCCGAGAAATATTTGCAACTTTTACAAGACCTCTGGCTTTACTGTATGAAAACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-'27-36,'27-34,35-36=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTTTGGAAGATGAAGTCC
R:
TCTCGGATCATAGAGGGCAAGG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types