DreEX0064347 @ danRer10
Exon Skipping
Gene
ENSDARG00000010531 | scamp4
Description
secretory carrier membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-050913-40]
Coordinates
chr22:22278027-22284259:+
Coord C1 exon
chr22:22278027-22278124
Coord A exon
chr22:22278221-22278349
Coord C2 exon
chr22:22284103-22284259
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGCTTTGTCTGACAGATC
3' ss Score
11.03
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
CATTAAAAACCATCAGTCCATTAGTTCAGGGAGAGTAAAAGTCCACCTTCACCAGAAGGATCAACATTGTGAACTTTCTCTAAATTGAAACATGACAG
Seq A exon
ATCGAACAAATAACTTCCCTCCTTTGCCAAAATTTCTTCGTATAAAGCCATGCTTTTACCAAAATTTTGATGAGGAAATTCCTCAACCCCACCGCCAGCTTGTGCGTCGCGTCTACAATCTTTGGATGT
Seq C2 exon
TGTATTCCATGACATTATGTGTGAACGTGGTGGGCTGCATAGCCTGGTGGGCCGGCGGTGGTAATGCCACCAACTTTGGGTTTTCGCTGCTCTGGCTGCTGATTTTCAGTCCGTGCAGTTACACCTGCTGGTTCAGACCGCTTTATAAAGCATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010531-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCATCAGTCCATTAGTTCAGGG
R:
CTTTATAAAGCGGTCTGAACCAGC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]