HsaEX6091628 @ hg19
Exon Skipping
Gene
ENSG00000227500 | SCAMP4
Description
secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:30385]
Coordinates
chr19:1914978-1918282:+
Coord C1 exon
chr19:1914978-1915025
Coord A exon
chr19:1917693-1917821
Coord C2 exon
chr19:1918126-1918282
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGGTTCTCTGTCCCTACAGAAA
3' ss Score
10.71
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCGGCTGCAGGCTTCAGCCTGCGCTGGTTGGTGAAACAGAGATGTCAG
Seq A exon
AAAAGGAGAACAACTTCCCGCCACTGCCCAAGTTCATCCCTGTGAAGCCCTGCTTCTACCAGAACTTCTCCGACGAGATCCCAGTGGAGCACCAGGTCCTGGTGAAGAGGATCTACCGGCTGTGGATGT
Seq C2 exon
TTTACTGCGCCACCCTCGGCGTCAACCTCATTGCCTGCCTGGCCTGGTGGATCGGCGGAGGCTCGGGGACCAACTTCGGCCTGGCCTTCGTGTGGCTGCTCCTGTTCACGCCTTGCGGCTACGTGTGCTGGTTCCGGCCTGTCTACAAGGCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227500-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(54.7=100),PF041448=SCAMP=PU(2.0=1.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTGGTTGGTGAAACA
R:
GGAAGGCCTTGTAGACAGGC
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)