BtaEX6040400 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045762 | SCAMP4
Description
Bos taurus secretory carrier membrane protein 4 (SCAMP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001024566]
Coordinates
chr7:45845649-45848043:+
Coord C1 exon
chr7:45845649-45845697
Coord A exon
chr7:45847267-45847395
Coord C2 exon
chr7:45847887-45848043
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCGCACCCCTGTCCCTGCAGGAA
3' ss Score
10.76
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GTGGCTGCAGGCTTCCACTCCCACCCTGTCTTCGCAGCGGAAATGTCAG
Seq A exon
GAAAGGAGAACAACTTCCCCCCGTTGCCCAAGTTCATTCCTCTGAAGCCCTGCTTCTACCAGAACTTCTCTGACGAAATCCCTATTGAGCACCAGGTCCTGGTGAAGAGGATCTACCGCCTGTGGCTGT
Seq C2 exon
TCTACTGTGCCACCCTGGGCGTCAACCTCGTTGCCTGCCTGGCCTGGTGGATCGCGGGTGGCTCAGGTGCTAACTTTGGCCTGGCTCTGCTCTGGCTGCTCCTCTTCTCGCCCTGCGGCTACGTGTGCTGGTTCCGGCCTGCCTACAAGGCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045762-'7-4,'7-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCTTCCACTCCCA
R:
CTTGTAGGCAGGCCGGAAC
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]