RnoEX0078304 @ rn6
Exon Skipping
Gene
ENSRNOG00000018271 | Scamp4
Description
secretory carrier membrane protein 4 [Source:RGD Symbol;Acc:68354]
Coordinates
chr7:11975182-11976245:-
Coord C1 exon
chr7:11976198-11976245
Coord A exon
chr7:11975571-11975699
Coord C2 exon
chr7:11975182-11975338
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGGGGTCTCCTTCCTACAGGAA
3' ss Score
10.46
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
Exon sequences
Seq C1 exon
GTGGCCCCTTCTGCCTGGGTGCCAGGTCAGCTGACACAGAAATGGCAG
Seq A exon
GAAAGGAGAACAACTTCCCCCCGCTGCCTCACTTCCTGCCGCTGAAGCCCTGCTTCTACCAGGACTTCTCTGATGAGATCCCGGTGGAGCACCAGGTGCTGGTGAAGAGGATCTACCGGCTGTGGATGT
Seq C2 exon
TTTACTGCACCACGCTGGGTGTAAACCTAGTGGCCTGCCTGGCCTGGTGGATTGCGGGCGGAGCGGGTGCCAATTTTGGCCTGGCCATGCTCTGGCTTGTTCTCTTCACTCCCTGCAGCTATGTGTGCTGGTTCCGGCCTGCCTACAAGGCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018271-'7-7,'7-4,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTTCTGCCTGGGTG
R:
CTTGTAGGCAGGCCGGAAC
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]