MmuEX0041138 @ mm10
Exon Skipping
Gene
ENSMUSG00000035370 | Adat3
Description
adenosine deaminase, tRNA-specific 3 [Source:MGI Symbol;Acc:MGI:1924344]
Coordinates
chr10:80608803-80609797:+
Coord C1 exon
chr10:80608803-80608850
Coord A exon
chr10:80609330-80609424
Coord C2 exon
chr10:80609641-80609797
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGAGGGTCTCCTTCCTGCAGGAA
3' ss Score
10.35
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
GTGGCCCCTTCTGCCTGGGTGCCAGGTCAGCTGATACAGAAATGGCAG
Seq A exon
GAAAGGAGAACAACTTCCCCCCACTGCCTCCCTTCCTGCCACTGAAGCCCTGCTTCTACCAGGACTTCTCTGATGAGATCCCCGTGGAGCACCAG
Seq C2 exon
TTTACTGTGCCACTCTGGGTGTGAACCTGGTGGCCTGCCTGGCCTGGTGGATTGCGGGCGGAGCTGGTGCCAATTTTGGCCTGGCCTTGCTCTGGCTGGTTCTCTTCACTCCCTGCAGTTATGTGTGCTGGTTCCGGCCTGCATACAAGGCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035370-'9-10,'9-9,10-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGGTCAGCTGATACAG
R:
CCGGAACCAGCACACATAACT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types