GgaEX6027852 @ galGal4
Exon Skipping
Gene
ENSGALG00000001030 | SCAMP4
Description
secretory carrier membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:30385]
Coordinates
chr28:2125537-2128585:-
Coord C1 exon
chr28:2128532-2128585
Coord A exon
chr28:2127072-2127200
Coord C2 exon
chr28:2125537-2125693
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGTTCTGTGTTGCAGAGA
3' ss Score
10.78
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
CTCTGCTGCCGTCCGGCTGTCGTGGCCCAGCGACGCCCTGAACCACCATGGCAG
Seq A exon
AGAAGGTGAATAACTTCCCACCGCTCCCCAAATTCATCCCCCTGAAGCCCTGCTTCTACCAGAACTTTTCGGATGAGATACCCATCGATTATCAGTCCCTGGTGAAGAGGATCTACCACGTCTGGATCT
Seq C2 exon
TTTACTGCATCACGCTGGTCGTGAACATCATTGCCTGCCTGGCGTGGTGGATTGGAGGTGGCTATGGTGTCAACTTTGGCTTGGCCATCCTCTGGCTGATCCTCTTCAGCCCCTGCAGCTACGTCTGCTGGTTCCGACCGGTGTACAAAGCCTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001030-'3-8,'3-4,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.7=95.5)
C2:
PF041448=SCAMP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCCTGAACCACCATG
R:
AAAGGCTTTGTACACCGGTCG
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]