DreEX6066977 @ danRer10
Exon Skipping
Gene
ENSDARG00000040274 | scamp5b
Description
secretory carrier membrane protein 5b [Source:ZFIN;Acc:ZDB-GENE-120215-76]
Coordinates
chr18:50094076-50096922:+
Coord C1 exon
chr18:50094076-50094125
Coord A exon
chr18:50094231-50094350
Coord C2 exon
chr18:50096766-50096922
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGTCCTGCAGAAA
3' ss Score
11.94
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ATTGAAAGCTCTTAAGAACAGTTTGCTGTCAGGAAGTTTCACGATGGCTG
Seq A exon
AAAACAACTTTCCACCTCTGCCGGGCTTCATTCCTCTCAAGCCGTGTTTCCACCAGGACTTTGAGGAGATTCCTGACCAGCACCGCACATTGTGCAAGAGATTCTACTACCTGTGGATCT
Seq C2 exon
TGTACGGCGTGACCCTGCTGGTGAATTTCTTCGGCTGTATGGCGTGGATGTTTGGTGGCGGTGGAGTCACAAACTTTGGCATGTCGATGATTTGGGTGATTCTCTTCACACCCTGCTCTTATGTGTGCTGGTTCCGGCCCATTTACAATGCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040274-'1-5,'1-2,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(0.6=33.3)
A:
PF041448=SCAMP=PD(95.1=95.1)
C2:
PF041448=SCAMP=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGCTCTTAAGAACAGTTTGCT
R:
AAGGCATTGTAAATGGGCCGG
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]